- Ape Plasmid Editor Version 2.09
- Ape Plasmid Editor For Mac
- Ape A Plasmid Editor Manual
- Ape Plasmid Editor
- Ape A Plasmid Editor Software
Plasmid Drawing Software download link. ApE 2.0.49: A Plasmid Editor: BVTech Plasmid 5.1 Demo: DNA plasmid drawing software: XPlasMap 0.99: a DNA mapping program for Mac OS. Free Online DNA Sequence Editor and Plasmid Drawing program. Advertise on this site. 3D Molecular Modeling. ApE (A Plasmid Editor) Free Download Information: Free Download 64 is not responsible for software you are downloading nor for details provided about the software 'ApE (A Plasmid Editor) 2.0.30 Alpha' listed here, as the developer can modify information without notifying us. Even if we try to check the files for viruses, we cannot guarantee. What is a good vector mapping software? If you need a sequence editor I can recommend. Feature management, and map drawing. It works the same on all platforms (Windows, Mac, Linux) and uses. For all Mac users: There is a severe bug in the latest OS versions (Yosemite and later, I think). When you double-click to open a file, if ApE is already running it will crash.
This repo is currently broken. Efforts are underway to restore it and move to a development and deployment branch system.
A free and open source GUI toolkit for DNA editing - written in python
This project aims to provide a powerful codebase for viewing, editing and creating DNA in the GenBank format. The code is free to use, modify and re-distribute under a GPL license. Contributions in the form of improvements and new functions are welcome and encouraged!
The software is being developed on a Linux machine and works well in that environment. As the software matures testing will start on Windows and Mac to make sure it is cross-platform. The only external library that is needed is wxPython. Launch main.py to give the software a go (it is still under heavy development though).
Testing
![Ape plasmid editor Ape plasmid editor](/uploads/1/2/6/7/126737698/642196269.jpg)
To start testing the software you have to install python, wxpython and pycairo:
Then you can download the software and run it: Review of iskysoft pdf editor pro for mac.
Known problems
Visual basic editor (vba) sample forms project excel for mac. On Ubuntu 15.04 the following message might occure:
This can be resolved by additionaly installing the package xclip:
- Visualization of DNA sequence with sequence features
- Plasmid view visualization
- DNA editing, copy, paste, reverse complement
- Unlimited undo/redo
- Easy search for nucleotide or amino acid positions or sequence
- Easy mutation by nucleotide or amino acid position (this one is pretty awesome!)
- Design of mixed base codons for libraries https://kissrenew.weebly.com/blog/best-editor-node-js-for-mac.
- DNA translation to protein
- Addition/removal/modification of genbank features
- Addition/removal/modification of genbank qualifiers
- Analysis of sequence reads in the .ab1 format
- Restriction enzyme finder
- [done] located restrictionsites in dna
- [partly] display restrictionsites in plasmid (missing zoom)
- [todo] improve dna editor to visualise cut location
- Addition/removal/modification of genbank header entries
- [todo] improve genbank parser to allow parsing of corrupted genbank files from ApE, Serial Cloner, SnapGen Viewer
- DNA codon optimization
- Fetch genes/plasmids from NCBI
- Primer design
- Calculation of ribosome binding strength
- NCBI blast for homologous genes
- Simulate PCR
- (Multiple) Sequence alignment
ApE (A Plasmid Editor) 2.0.30 Alpha
ApE is a small, easy-to-use plasmid editor. ApE was developed to be a small, easy-to-use plasmid editor.
ApE Features:
1. Runs in Windows (tested on 98, XP, NT), OS X(10.3, 10.4 and 10.5), and Linux/Unix
2.
ApE Features:
1. Runs in Windows (tested on 98, XP, NT), OS X(10.3, 10.4 and 10.5), and Linux/Unix
2.
ApE is a small, easy-to-use plasmid editor. ApE was developed to be a small, easy-to-use plasmid editor.
ApE Features:
1. Runs in Windows (tested on 98, XP, NT), OS X(10.3, 10.4 and 10.5), and Linux/Unix
2. Highlights restriction sites in the editing window
3. Accurately reflects Dam/Dcm blocking of enzyme sites
4. Highlights text using pre-defined and custom feature libraries
5. Shows translation, Tm, %GC, ORF of selected DNA in real-time
6. Reads DNA Strider, Fasta, Genbank and EMBL files
7. Saves files as DNA Strider-compatible or Genbank file format
8. Highlights and draws graphic maps using feature annotations from genbank and embl files
9. Directly BLASTs selected sequence at NCBI or wormbase
10. Text map shows DNA sequence, translation, and features as text-based graphics
11. Creates graphic restriction maps- linear or circular with features indicated
12. Connects graphic and text features with hyperlink double click
13. Saves graphics as encapsulated postscript or scalable vector graphics
14. Copy and save graphics as Windows metafiles (MS Windows only)
15. Virtual restriction digest
16. Draws pre-defined and user-defined DNA ladders
17. Connects bands to text by double-click
18. Reads ABI sequencing trace files
19. Sequences in ABI traces can be aligned directly to a reference sequence, with the alignment hyperlinked back to te trace.
20. Selects sites matching multiple criteria (union/intersection- cut frequency, site type) in all open windows
21. Selects sites that cut more often in one sequence than another (for snip-SNP detection or diagnostic digests)
22. Has user defined enzyme grouping to distiguish eg. enzymes currently in stock.
23. Allows users to define new enzymes by name and recognition site
24. Imports DNA Strider format files (simple enzyme, site lists) available from REBASEOther Features:
1. Most analysis windows are hyperlinked to their corresponding sequences, includes:
* Graphic Maps
* Text maps
* Virtual Digests
* Alignments (including ABI sequences)
* Silent Sites
* Translation
* Primer Find2. Uses custom feature definition libraries, which allow:
* Quick annotation of sequence
* Quick searching and highlighting of all available primers that you (or others) have that hybridize to a sequence
* Sequence to be annotated and visualized in multiple ways quickly and efficiently
* Graphic maps that show primer binding sites and all interesting sequence features3. Translates sequences with optional DNA alignment
4. Finds potential primers matching user criteria (length, Tm, %GC, self/other complementarity)
5. Aligns two DNA sequences (or any combination of sequence and ABI trace), with the alignment hyperlinked to the original sequence
6. Finds translationally silent restriction sites
7. Draws graphic ORF maps
ApE Features:
1. Runs in Windows (tested on 98, XP, NT), OS X(10.3, 10.4 and 10.5), and Linux/Unix
2. Highlights restriction sites in the editing window
3. Accurately reflects Dam/Dcm blocking of enzyme sites
4. Highlights text using pre-defined and custom feature libraries
5. Shows translation, Tm, %GC, ORF of selected DNA in real-time
6. Reads DNA Strider, Fasta, Genbank and EMBL files
7. Saves files as DNA Strider-compatible or Genbank file format
8. Highlights and draws graphic maps using feature annotations from genbank and embl files
9. Directly BLASTs selected sequence at NCBI or wormbase
10. Text map shows DNA sequence, translation, and features as text-based graphics
11. Creates graphic restriction maps- linear or circular with features indicated
12. Connects graphic and text features with hyperlink double click
13. Saves graphics as encapsulated postscript or scalable vector graphics
14. Copy and save graphics as Windows metafiles (MS Windows only)
15. Virtual restriction digest
16. Draws pre-defined and user-defined DNA ladders
17. Connects bands to text by double-click
18. Reads ABI sequencing trace files
19. Sequences in ABI traces can be aligned directly to a reference sequence, with the alignment hyperlinked back to te trace.
20. Selects sites matching multiple criteria (union/intersection- cut frequency, site type) in all open windows
21. Selects sites that cut more often in one sequence than another (for snip-SNP detection or diagnostic digests)
22. Has user defined enzyme grouping to distiguish eg. enzymes currently in stock.
23. Allows users to define new enzymes by name and recognition site
24. Imports DNA Strider format files (simple enzyme, site lists) available from REBASEOther Features:
1. Most analysis windows are hyperlinked to their corresponding sequences, includes:
* Graphic Maps
* Text maps
* Virtual Digests
* Alignments (including ABI sequences)
* Silent Sites
* Translation
* Primer Find2. Uses custom feature definition libraries, which allow:
* Quick annotation of sequence
* Quick searching and highlighting of all available primers that you (or others) have that hybridize to a sequence
* Sequence to be annotated and visualized in multiple ways quickly and efficiently
* Graphic maps that show primer binding sites and all interesting sequence features3. Translates sequences with optional DNA alignment
4. Finds potential primers matching user criteria (length, Tm, %GC, self/other complementarity)
5. Aligns two DNA sequences (or any combination of sequence and ABI trace), with the alignment hyperlinked to the original sequence
6. Finds translationally silent restriction sites
7. Draws graphic ORF maps
Best free editor software for mac. ApE (A Plasmid Editor) Free Download Information: Free Download 64 is not responsible for software you are downloading nor for details provided about the software 'ApE (A Plasmid Editor) 2.0.30 Alpha' listed here, as the developer can modify information without notifying us. Even if we try to check the files for viruses, we cannot guarantee that they are safe and clean. For your own protection always scan downloaded files for viruses, spyware and malware.
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